Method 1: Manual Search to Delete Empty Folders in WindowsĪ manual search for empty folders acts like any other search on your computer. Pro-Users Tip: Recover the files in the folder deleted by accidently?.Method 5: Using Empty folder cleaner for Windows 10 Users.Method 4: Find and remove empty folders using Robocopy.Method 3: Remove empty folders using 'for' and 'rd' commands.Method 2: Using Command prompt to Search for and locate empty folders.Method 1: Manual Search to Delete Empty Folders in Windows.